Born in Bradford Data Dictionary

MS metabolomics paired mother samples compound metadata

Table ID: BiB_Metabolomics.metms_pairm_c

github | csv

Entity type Variables Entities Updated
Compound 19 1168 2022-07-21

Meta data about compounds (markers) from mass spectrometry metabolomics (Metabolon) on paired mother samples.

variable value_type summary
VariableNameRaw text 1168 unique values
1168 non-missing values
8 to 11 characters
VariableNameScaled text 1168 unique values
1168 non-missing values
8 to 11 characters
chem_id decimal mean (sd)
260519792.50 (367045555.45)

min < median < max
35.00 < 100004470.50 < 999925828.00

Complete: 1168 (100.00%)

lib_id decimal mean (sd)
287.11 (91.46)

min < median < max
209.00 < 209.00 < 402.00

Complete: 1168 (100.00%)

chro_lib_entry_id decimal mean (sd)
165800.20 (32282.48)

min < median < max
123153.00 < 155996.50 < 240094.00

Complete: 1168 (100.00%)

super_pathway decimal 1 : Amino Acid
2 : Carbohydrate
3 : Cofactors and Vitamins
4 : Energy
5 : Lipid
6 : Nucleotide
7 : Partially Characterized Molecules
8 : Peptide
9 : Xenobiotics
Complete: 939 (80.39%)

sub_pathway decimal 1 : Acetylated Peptides
10 : Ceramide PEs
100 : Short Chain Fatty Acid
101 : Sphingolipid Synthesis
102 : Sphingomyelins
103 : Sphingosines
104 : Sterol
105 : TCA Cycle
106 : Tobacco Metabolite
107 : Tocopherol Metabolism
108 : Tryptophan Metabolism
109 : Tyrosine Metabolism
11 : Ceramides
110 : Urea cycle; Arginine and Proline Metabolism
111 : Vitamin A Metabolism
112 : Vitamin B6 Metabolism
113 : Xanthine Metabolism
12 : Chemical
13 : Corticosteroids
14 : Creatine Metabolism
15 : Diacylglycerol
16 : Dihydroceramides
17 : Dihydrosphingomyelins
18 : Dipeptide
19 : Disaccharides and Oligosaccharides
2 : Advanced Glycation End-product
20 : Drug - Analgesics, Anesthetics
21 : Drug - Antibiotic
22 : Drug - Cardiovascular
23 : Drug - Gastrointestinal
24 : Drug - Neurological
25 : Drug - Other
26 : Drug - Psychoactive
27 : Drug - Topical Agents
28 : Endocannabinoid
29 : Estrogenic Steroids
3 : Alanine and Aspartate Metabolism
30 : Fatty Acid Metabolism (Acyl Carnitine, Dicarboxylate)
31 : Fatty Acid Metabolism (Acyl Carnitine, Hydroxy)
32 : Fatty Acid Metabolism (Acyl Carnitine, Long Chain Saturated)
33 : Fatty Acid Metabolism (Acyl Carnitine, Medium Chain)
34 : Fatty Acid Metabolism (Acyl Carnitine, Monounsaturated)
35 : Fatty Acid Metabolism (Acyl Carnitine, Polyunsaturated)
36 : Fatty Acid Metabolism (Acyl Carnitine, Short Chain)
37 : Fatty Acid Metabolism (Acyl Choline)
38 : Fatty Acid Metabolism (Acyl Glutamine)
39 : Fatty Acid Metabolism (Acyl Glycine)
4 : Aminosugar Metabolism
40 : Fatty Acid Metabolism (also BCAA Metabolism)
41 : Fatty Acid, Amide
42 : Fatty Acid, Amino
43 : Fatty Acid, Branched
44 : Fatty Acid, Dicarboxylate
45 : Fatty Acid, Dihydroxy
46 : Fatty Acid, Monohydroxy
47 : Fibrinogen Cleavage Peptide
48 : Food Component/Plant
49 : Fructose, Mannose and Galactose Metabolism
5 : Androgenic Steroids
50 : Gamma-glutamyl Amino Acid
51 : Glutamate Metabolism
52 : Glutathione Metabolism
53 : Glycerolipid Metabolism
54 : Glycine, Serine and Threonine Metabolism
55 : Glycolysis, Gluconeogenesis, and Pyruvate Metabolism
56 : Guanidino and Acetamido Metabolism
57 : Hemoglobin and Porphyrin Metabolism
58 : Hexosylceramides (HCER)
59 : Histidine Metabolism
6 : Ascorbate and Aldarate Metabolism
60 : Inositol Metabolism
61 : Ketone Bodies
62 : Lactosylceramides (LCER)
63 : Leucine, Isoleucine and Valine Metabolism
64 : Long Chain Monounsaturated Fatty Acid
65 : Long Chain Polyunsaturated Fatty Acid (n3 and n6)
66 : Long Chain Saturated Fatty Acid
67 : Lysine Metabolism
68 : Lysophospholipid
69 : Lysoplasmalogen
7 : Bacterial/Fungal
70 : Medium Chain Fatty Acid
71 : Methionine, Cysteine, SAM and Taurine Metabolism
72 : Mevalonate Metabolism
73 : Monoacylglycerol
74 : Nicotinate and Nicotinamide Metabolism
75 : Oxidative Phosphorylation
76 : Pantothenate and CoA Metabolism
77 : Partially Characterized Molecules
78 : Pentose Metabolism
79 : Phenylalanine Metabolism
8 : Benzoate Metabolism
80 : Phosphatidylcholine (PC)
81 : Phosphatidylethanolamine (PE)
82 : Phosphatidylinositol (PI)
83 : Phosphatidylserine (PS)
84 : Phospholipid Metabolism
85 : Plasmalogen
86 : Polyamine Metabolism
87 : Polypeptide
88 : Pregnenolone Steroids
89 : Primary Bile Acid Metabolism
9 : Carnitine Metabolism
90 : Progestin Steroids
91 : Purine Metabolism, (Hypo)Xanthine/Inosine containing
92 : Purine Metabolism, Adenine containing
93 : Purine Metabolism, Guanine containing
94 : Pyrimidine Metabolism, Cytidine containing
95 : Pyrimidine Metabolism, Orotate containing
96 : Pyrimidine Metabolism, Thymine containing
97 : Pyrimidine Metabolism, Uracil containing
98 : Riboflavin Metabolism
99 : Secondary Bile Acid Metabolism
Complete: 939 (80.39%)

pathway_sortorder decimal mean (sd)
2683.89 (1845.38)

min < median < max
1.00 < 2612.00 < 6453.00

Complete: 939 (80.39%)

type text 2 unique values
1168 non-missing values
5 to 7 characters
inchikey text 638 unique values
646 non-missing values
4 to 27 characters
smiles text 908 unique values
915 non-missing values
7 to 211 characters
chemical_name text 1168 unique values
1168 non-missing values
4 to 67 characters
plot_name text 1168 unique values
1168 non-missing values
3 to 67 characters
cas text 592 unique values
593 non-missing values
6 to 28 characters
chemspider text 668 unique values
669 non-missing values
2 to 12 characters
hmdb text 725 unique values
736 non-missing values
9 to 47 characters
kegg text 376 unique values
387 non-missing values
5 to 27 characters
pubchem text 750 unique values
756 non-missing values
2 to 34 characters
platform decimal 1 : Neg
2 : Polar
3 : Pos Early
4 : Pos Late
Complete: 1168 (100.00%)