Born in Bradford Data Dictionary

MS metabolomics paired child samples compound metadata

Table ID: BiB_Metabolomics.metms_pairc_c

github | csv

Entity type Variables Entities Updated
Compound 14 1369 2021-02-05

Meta data about compounds (markers) from mass spectrometry metabolomics (Metabolon) on paired child samples.

variable value_type summary
VariableNameRaw text 1369 unique values
1369 non-missing values
8 to 11 characters
VariableNameScaled text 1369 unique values
1369 non-missing values
8 to 11 characters
pathway_sortorder decimal mean (sd)
2102.86 (1420.01)

min < median < max
1.00 < 2054.50 < 4947.00

73.05% complete

biochemical text 1369 unique values
1369 non-missing values
4 to 74 characters
super_pathway decimal 1 : Amino Acid
2 : Carbohydrate
3 : Cofactors and Vitamins
4 : Energy
5 : Lipid
6 : Nucleotide
7 : Partially Characterized Molecules
8 : Peptide
9 : Xenobiotics
73.05% complete

sub_pathway decimal 1 : Acetylated Peptides
10 : Chemical
100 : TCA Cycle
101 : Tobacco Metabolite
102 : Tocopherol Metabolism
103 : Tryptophan Metabolism
104 : Tyrosine Metabolism
105 : Urea cycle;Arginine and Proline Metabolism
106 : Vitamin A Metabolism
107 : Vitamin B6 Metabolism
108 : Xanthine Metabolism
11 : Corticosteroids
12 : Creatine Metabolism
13 : Diacylglycerol
14 : Dihydroceramides
15 : Dihydrosphingomyelins
16 : Dinucleotide
17 : Dipeptide
18 : Disaccharides and Oligosaccharides
19 : Drug - Analgesics, Anesthetics
2 : Alanine and Aspartate Metabolism
20 : Drug - Antibiotic
21 : Drug - Cardiovascular
22 : Drug - Gastrointestinal
23 : Drug - Metabolic
24 : Drug - Neurological
25 : Drug - Other
26 : Drug - Psychoactive
27 : Drug - Respiratory
28 : Drug - Topical Agents
29 : Endocannabinoid
3 : Aminosugar Metabolism
30 : Estrogenic Steroids
31 : Fatty Acid Metabolism (Acyl Choline)
32 : Fatty Acid Metabolism (Acyl Glutamine)
33 : Fatty Acid Metabolism (also BCAA Metabolism)
34 : Fatty Acid Metabolism(Acyl Carnitine)
35 : Fatty Acid Metabolism(Acyl Glycine)
36 : Fatty Acid Synthesis
37 : Fatty Acid, Amino
38 : Fatty Acid, Branched
39 : Fatty Acid, Dicarboxylate
4 : Androgenic Steroids
40 : Fatty Acid, Dihydroxy
41 : Fatty Acid, Monohydroxy
42 : Fibrinogen Cleavage Peptide
43 : Food Component/Plant
44 : Fructose, Mannose and Galactose Metabolism
45 : Gamma-glutamyl Amino Acid
46 : Glutamate Metabolism
47 : Glutathione Metabolism
48 : Glycerolipid Metabolism
49 : Glycine, Serine and Threonine Metabolism
5 : Ascorbate and Aldarate Metabolism
50 : Glycogen Metabolism
51 : Glycolysis, Gluconeogenesis, and Pyruvate Metabolism
52 : Guanidino and Acetamido Metabolism
53 : Hemoglobin and Porphyrin Metabolism
54 : Hexosylceramides (HCER)
55 : Histidine Metabolism
56 : Inositol Metabolism
57 : Ketone Bodies
58 : Lactosylceramides (LCER)
59 : Leucine, Isoleucine and Valine Metabolism
6 : Bacterial/Fungal
60 : Long Chain Fatty Acid
61 : Lysine Metabolism
62 : Lysophospholipid
63 : Lysoplasmalogen
64 : Medium Chain Fatty Acid
65 : Methionine, Cysteine, SAM and Taurine Metabolism
66 : Mevalonate Metabolism
67 : Monoacylglycerol
68 : Nicotinate and Nicotinamide Metabolism
69 : Oxidative Phosphorylation
7 : Benzoate Metabolism
70 : Pantothenate and CoA Metabolism
71 : Partially Characterized Molecules
72 : Pentose Metabolism
73 : Phenylalanine Metabolism
74 : Phosphatidylcholine (PC)
75 : Phosphatidylethanolamine (PE)
76 : Phosphatidylglycerol (PG)
77 : Phosphatidylinositol (PI)
78 : Phosphatidylserine (PS)
79 : Phospholipid Metabolism
8 : Carnitine Metabolism
80 : Plasmalogen
81 : Polyamine Metabolism
82 : Polypeptide
83 : Polyunsaturated Fatty Acid (n3 and n6)
84 : Pregnenolone Steroids
85 : Primary Bile Acid Metabolism
86 : Progestin Steroids
87 : Purine Metabolism, (Hypo)Xanthine/Inosine containing
88 : Purine Metabolism, Adenine containing
89 : Purine Metabolism, Guanine containing
9 : Ceramides
90 : Pyrimidine Metabolism, Cytidine containing
91 : Pyrimidine Metabolism, Orotate containing
92 : Pyrimidine Metabolism, Thymine containing
93 : Pyrimidine Metabolism, Uracil containing
94 : Riboflavin Metabolism
95 : Secondary Bile Acid Metabolism
96 : Sphingolipid Synthesis
97 : Sphingomyelins
98 : Sphingosines
99 : Sterol
73.05% complete

platform decimal 1 : LC/MS Neg
2 : LC/MS Polar
3 : LC/MS Pos Early
4 : LC/MS Pos Late
100.00% complete

chemical_id decimal mean (sd)
78204942.22 (41311615.46)

min < median < max
35.00 < 100001877.00 < 100020827.00

73.05% complete

ri decimal mean (sd)
2771.24 (1421.54)

min < median < max
517.40 < 2479.00 < 6650.00

100.00% complete

mass decimal mean (sd)
317.12 (182.67)

min < median < max
74.07 < 256.02 < 972.73

100.00% complete

cas text 657 unique values
659 non-missing values
6 to 28 characters
pubchem decimal mean (sd)
3829401.72 (12276155.76)

min < median < max
1.00 < 106267.50 < 101724840.00

50.55% complete

kegg text 407 unique values
417 non-missing values
6 to 13 characters
hmdb text 642 unique values
657 non-missing values
9 to 19 characters