Born in Bradford Data Dictionary

MS metabolomics 2000 mothers compound metadata

Table ID: BiB_Metabolomics.metms_2k_c

github | csv

Entity type Variables Entities Updated
Compound 14 1239 2021-02-05

Meta data about compounds (markers) from mass spectrometry metabolomics (Metabolon) on 2000 pregnancy samples.

variable value_type summary
VariableNameRaw text 1239 unique values
1239 non-missing values
8 to 11 characters
VariableNameScaled text 1239 unique values
1239 non-missing values
8 to 11 characters
pathway_sortorder decimal mean (sd)
2374.40 (1622.27)

min < median < max
1.00 < 2306.00 < 5434.00

77.89% complete

biochemical text 1239 unique values
1239 non-missing values
3 to 67 characters
super_pathway decimal 1 : Amino Acid
2 : Carbohydrate
3 : Cofactors and Vitamins
4 : Energy
5 : Lipid
6 : Nucleotide
7 : Partially Characterized Molecules
8 : Peptide
9 : Xenobiotics
77.89% complete

sub_pathway decimal 1 : Acetylated Peptides
10 : Ceramide PEs
100 : Secondary Bile Acid Metabolism
101 : Short Chain Fatty Acid
102 : Sphingolipid Synthesis
103 : Sphingomyelins
104 : Sphingosines
105 : Sterol
106 : TCA Cycle
107 : Tobacco Metabolite
108 : Tocopherol Metabolism
109 : Tryptophan Metabolism
11 : Ceramides
110 : Tyrosine Metabolism
111 : Urea cycle; Arginine and Proline Metabolism
112 : Vitamin A Metabolism
113 : Vitamin B6 Metabolism
114 : Xanthine Metabolism
12 : Chemical
13 : Corticosteroids
14 : Creatine Metabolism
15 : Diacylglycerol
16 : Dihydroceramides
17 : Dihydrosphingomyelins
18 : Dipeptide
19 : Disaccharides and Oligosaccharides
2 : Advanced Glycation End-product
20 : Drug - Analgesics, Anesthetics
21 : Drug - Antibiotic
22 : Drug - Cardiovascular
23 : Drug - Gastrointestinal
24 : Drug - Metabolic
25 : Drug - Neurological
26 : Drug - Other
27 : Drug - Psychoactive
28 : Drug - Topical Agents
29 : Endocannabinoid
3 : Alanine and Aspartate Metabolism
30 : Estrogenic Steroids
31 : Fatty Acid Metabolism (Acyl Carnitine, Dicarboxylate)
32 : Fatty Acid Metabolism (Acyl Carnitine, Hydroxy)
33 : Fatty Acid Metabolism (Acyl Carnitine, Long Chain Saturated)
34 : Fatty Acid Metabolism (Acyl Carnitine, Medium Chain)
35 : Fatty Acid Metabolism (Acyl Carnitine, Monounsaturated)
36 : Fatty Acid Metabolism (Acyl Carnitine, Polyunsaturated)
37 : Fatty Acid Metabolism (Acyl Carnitine, Short Chain)
38 : Fatty Acid Metabolism (Acyl Choline)
39 : Fatty Acid Metabolism (Acyl Glutamine)
4 : Aminosugar Metabolism
40 : Fatty Acid Metabolism (Acyl Glycine)
41 : Fatty Acid Metabolism (also BCAA Metabolism)
42 : Fatty Acid, Amide
43 : Fatty Acid, Amino
44 : Fatty Acid, Branched
45 : Fatty Acid, Dicarboxylate
46 : Fatty Acid, Dihydroxy
47 : Fatty Acid, Monohydroxy
48 : Fibrinogen Cleavage Peptide
49 : Food Component/Plant
5 : Androgenic Steroids
50 : Fructose, Mannose and Galactose Metabolism
51 : Gamma-glutamyl Amino Acid
52 : Glutamate Metabolism
53 : Glutathione Metabolism
54 : Glycerolipid Metabolism
55 : Glycine, Serine and Threonine Metabolism
56 : Glycolysis, Gluconeogenesis, and Pyruvate Metabolism
57 : Guanidino and Acetamido Metabolism
58 : Hemoglobin and Porphyrin Metabolism
59 : Hexosylceramides (HCER)
6 : Ascorbate and Aldarate Metabolism
60 : Histidine Metabolism
61 : Inositol Metabolism
62 : Ketone Bodies
63 : Lactosylceramides (LCER)
64 : Leucine, Isoleucine and Valine Metabolism
65 : Long Chain Monounsaturated Fatty Acid
66 : Long Chain Polyunsaturated Fatty Acid (n3 and n6)
67 : Long Chain Saturated Fatty Acid
68 : Lysine Metabolism
69 : Lysophospholipid
7 : Bacterial/Fungal
70 : Lysoplasmalogen
71 : Medium Chain Fatty Acid
72 : Methionine, Cysteine, SAM and Taurine Metabolism
73 : Mevalonate Metabolism
74 : Monoacylglycerol
75 : Nicotinate and Nicotinamide Metabolism
76 : Oxidative Phosphorylation
77 : Pantothenate and CoA Metabolism
78 : Partially Characterized Molecules
79 : Pentose Metabolism
8 : Benzoate Metabolism
80 : Phenylalanine Metabolism
81 : Phosphatidylcholine (PC)
82 : Phosphatidylethanolamine (PE)
83 : Phosphatidylinositol (PI)
84 : Phosphatidylserine (PS)
85 : Phospholipid Metabolism
86 : Plasmalogen
87 : Polyamine Metabolism
88 : Polypeptide
89 : Pregnenolone Steroids
9 : Carnitine Metabolism
90 : Primary Bile Acid Metabolism
91 : Progestin Steroids
92 : Purine Metabolism, (Hypo)Xanthine/Inosine containing
93 : Purine Metabolism, Adenine containing
94 : Purine Metabolism, Guanine containing
95 : Pyrimidine Metabolism, Cytidine containing
96 : Pyrimidine Metabolism, Orotate containing
97 : Pyrimidine Metabolism, Thymine containing
98 : Pyrimidine Metabolism, Uracil containing
99 : Riboflavin Metabolism
77.89% complete

platform decimal 1 : LC/MS Neg
2 : LC/MS Polar
3 : LC/MS Pos Early
4 : LC/MS Pos Late
100.00% complete

chemical_id decimal mean (sd)
79694911.84 (40254686.74)

min < median < max
35.00 < 100002017.00 < 100021726.00

77.89% complete

ri decimal mean (sd)
2736.55 (1448.46)

min < median < max
517.40 < 2383.00 < 6650.00

100.00% complete

mass decimal mean (sd)
306.20 (179.83)

min < median < max
76.04 < 246.07 < 972.73

100.00% complete

pubchem text 654 unique values
657 non-missing values
1 to 13 characters
cas text 621 unique values
622 non-missing values
6 to 28 characters
kegg text 370 unique values
377 non-missing values
6 to 13 characters
hmdb text 608 unique values
615 non-missing values
9 to 19 characters