BiB genotyping data linkage
Table ID: BiB_CohortInfo.genotyping_info
Entity type | Variables | Entities | Updated | Related tables |
---|---|---|---|---|
Participant | 10 | 20710 | 2022-09-29 | NA |
Information about available genotyping data including links to sample IDs.
variable | label | value_type | summary |
---|---|---|---|
ParticipantType | BiB participant type | decimal | 1 : Child 2 : Father 3 : Mother Complete: 21256 (100.00%) |
Gender | Participant Gender | decimal | 1 : Female 2 : Male Complete: 21256 (100.00%) |
lab_id | text | 21256 unique values 21256 non-missing values 17 to 19 characters |
|
gt_chip | Genotyping chip type | decimal | 1 : Core Exome 2 : GSA Complete: 21256 (100.00%) |
ethnicity | Ethnic group determined by genotype PCA | decimal | 1 : Not in PCA 2 : Other 3 : Pakistani 4 : White European Complete: 21256 (100.00%) |
passed_qc | Sample included in curated dataset | decimal | 0 : No 1 : Yes Complete: 21256 (100.00%) |
copies | Copies e.g. samples from other pregnancies | decimal | mean (sd) 0.05 (0.23) min < median < max 0.00 < 0.00 < 2.00 Complete: 21256 (100.00%) |
has_BiB12v1_0 | Has BiB12 Version 1.0 HumanCoreExome Chip | decimal | mean (sd) 0.47 (0.50) min < median < max 0.00 < 0.00 < 1.00 Complete: 21256 (100.00%) |
has_BiB12v1_1 | Has BiB12 Version 1.1 HumanCoreExome Chip | decimal | mean (sd) 0.05 (0.21) min < median < max 0.00 < 0.00 < 1.00 Complete: 21256 (100.00%) |
has_BiB24v1_0 | Has BiB24 Version 1.0 HumanCoreExome Chip | decimal | mean (sd) 0.25 (0.43) min < median < max 0.00 < 0.00 < 1.00 Complete: 21256 (100.00%) |