MS metabolomics 2000 mothers compound metadata
Table ID: BiB_Metabolomics.metms_2k_c
Entity type | Variables | Entities | Updated |
---|---|---|---|
Compound | 14 | 1239 | 2022-09-30 |
Meta data about compounds (markers) from mass spectrometry metabolomics (Metabolon) on 2000 pregnancy samples.
variable | value_type | summary |
---|---|---|
VariableNameRaw | text | 1239 unique values 1239 non-missing values 8 to 11 characters |
VariableNameScaled | text | 1239 unique values 1239 non-missing values 8 to 11 characters |
pathway_sortorder | decimal | mean (sd) 2374.40 (1622.27) min < median < max 1.00 < 2306.00 < 5434.00 Complete: 965 (77.89%) |
biochemical | text | 1239 unique values 1239 non-missing values 3 to 67 characters |
super_pathway | decimal | 1 : Amino Acid 2 : Carbohydrate 3 : Cofactors and Vitamins 4 : Energy 5 : Lipid 6 : Nucleotide 7 : Partially Characterized Molecules 8 : Peptide 9 : Xenobiotics Complete: 965 (77.89%) |
sub_pathway | decimal | 1 : Acetylated Peptides 10 : Ceramide PEs 100 : Secondary Bile Acid Metabolism 101 : Short Chain Fatty Acid 102 : Sphingolipid Synthesis 103 : Sphingomyelins 104 : Sphingosines 105 : Sterol 106 : TCA Cycle 107 : Tobacco Metabolite 108 : Tocopherol Metabolism 109 : Tryptophan Metabolism 11 : Ceramides 110 : Tyrosine Metabolism 111 : Urea cycle; Arginine and Proline Metabolism 112 : Vitamin A Metabolism 113 : Vitamin B6 Metabolism 114 : Xanthine Metabolism 12 : Chemical 13 : Corticosteroids 14 : Creatine Metabolism 15 : Diacylglycerol 16 : Dihydroceramides 17 : Dihydrosphingomyelins 18 : Dipeptide 19 : Disaccharides and Oligosaccharides 2 : Advanced Glycation End-product 20 : Drug - Analgesics, Anesthetics 21 : Drug - Antibiotic 22 : Drug - Cardiovascular 23 : Drug - Gastrointestinal 24 : Drug - Metabolic 25 : Drug - Neurological 26 : Drug - Other 27 : Drug - Psychoactive 28 : Drug - Topical Agents 29 : Endocannabinoid 3 : Alanine and Aspartate Metabolism 30 : Estrogenic Steroids 31 : Fatty Acid Metabolism (Acyl Carnitine, Dicarboxylate) 32 : Fatty Acid Metabolism (Acyl Carnitine, Hydroxy) 33 : Fatty Acid Metabolism (Acyl Carnitine, Long Chain Saturated) 34 : Fatty Acid Metabolism (Acyl Carnitine, Medium Chain) 35 : Fatty Acid Metabolism (Acyl Carnitine, Monounsaturated) 36 : Fatty Acid Metabolism (Acyl Carnitine, Polyunsaturated) 37 : Fatty Acid Metabolism (Acyl Carnitine, Short Chain) 38 : Fatty Acid Metabolism (Acyl Choline) 39 : Fatty Acid Metabolism (Acyl Glutamine) 4 : Aminosugar Metabolism 40 : Fatty Acid Metabolism (Acyl Glycine) 41 : Fatty Acid Metabolism (also BCAA Metabolism) 42 : Fatty Acid, Amide 43 : Fatty Acid, Amino 44 : Fatty Acid, Branched 45 : Fatty Acid, Dicarboxylate 46 : Fatty Acid, Dihydroxy 47 : Fatty Acid, Monohydroxy 48 : Fibrinogen Cleavage Peptide 49 : Food Component/Plant 5 : Androgenic Steroids 50 : Fructose, Mannose and Galactose Metabolism 51 : Gamma-glutamyl Amino Acid 52 : Glutamate Metabolism 53 : Glutathione Metabolism 54 : Glycerolipid Metabolism 55 : Glycine, Serine and Threonine Metabolism 56 : Glycolysis, Gluconeogenesis, and Pyruvate Metabolism 57 : Guanidino and Acetamido Metabolism 58 : Hemoglobin and Porphyrin Metabolism 59 : Hexosylceramides (HCER) 6 : Ascorbate and Aldarate Metabolism 60 : Histidine Metabolism 61 : Inositol Metabolism 62 : Ketone Bodies 63 : Lactosylceramides (LCER) 64 : Leucine, Isoleucine and Valine Metabolism 65 : Long Chain Monounsaturated Fatty Acid 66 : Long Chain Polyunsaturated Fatty Acid (n3 and n6) 67 : Long Chain Saturated Fatty Acid 68 : Lysine Metabolism 69 : Lysophospholipid 7 : Bacterial/Fungal 70 : Lysoplasmalogen 71 : Medium Chain Fatty Acid 72 : Methionine, Cysteine, SAM and Taurine Metabolism 73 : Mevalonate Metabolism 74 : Monoacylglycerol 75 : Nicotinate and Nicotinamide Metabolism 76 : Oxidative Phosphorylation 77 : Pantothenate and CoA Metabolism 78 : Partially Characterized Molecules 79 : Pentose Metabolism 8 : Benzoate Metabolism 80 : Phenylalanine Metabolism 81 : Phosphatidylcholine (PC) 82 : Phosphatidylethanolamine (PE) 83 : Phosphatidylinositol (PI) 84 : Phosphatidylserine (PS) 85 : Phospholipid Metabolism 86 : Plasmalogen 87 : Polyamine Metabolism 88 : Polypeptide 89 : Pregnenolone Steroids 9 : Carnitine Metabolism 90 : Primary Bile Acid Metabolism 91 : Progestin Steroids 92 : Purine Metabolism, (Hypo)Xanthine/Inosine containing 93 : Purine Metabolism, Adenine containing 94 : Purine Metabolism, Guanine containing 95 : Pyrimidine Metabolism, Cytidine containing 96 : Pyrimidine Metabolism, Orotate containing 97 : Pyrimidine Metabolism, Thymine containing 98 : Pyrimidine Metabolism, Uracil containing 99 : Riboflavin Metabolism Complete: 965 (77.89%) |
platform | decimal | 1 : LC/MS Neg 2 : LC/MS Polar 3 : LC/MS Pos Early 4 : LC/MS Pos Late Complete: 1239 (100.00%) |
chemical_id | decimal | mean (sd) 79694920.37 (40254691.05) min < median < max 35.00 < 100002017.00 < 100022485.00 Complete: 965 (77.89%) |
ri | decimal | mean (sd) 2736.55 (1448.46) min < median < max 517.40 < 2383.00 < 6650.00 Complete: 1239 (100.00%) |
mass | decimal | mean (sd) 306.20 (179.83) min < median < max 76.04 < 246.07 < 972.73 Complete: 1239 (100.00%) |
pubchem | text | 658 unique values 661 non-missing values 1 to 13 characters |
cas | text | 625 unique values 626 non-missing values 6 to 28 characters |
kegg | text | 370 unique values 377 non-missing values 6 to 13 characters |
hmdb | text | 612 unique values 619 non-missing values 9 to 19 characters |